STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cycACytochrome C2; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (114 aa)    
Predicted Functional Partners:
petA
Ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.977
petC
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.962
petB
Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.925
XCC2354
Formate dehydrogenase a chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.904
XCC3524
Zinc protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.868
nuoD
NADH-ubiquinone oxidoreductase NQO4 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.820
XCC3477
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
 
 0.819
cyoC
Cytochrome O ubiquinol oxidase subunit III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.807
XCC3277
Cytochrome C6; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.807
cox3
Cytochrome C oxidase subunit III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.807
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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