Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tlyCHemolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (436 aa)    
Predicted Functional Partners:
XCC0056
Hemolysin III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.814
hly3
Hemolysin III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.814
exoD
ExoD protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.734
pitA
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
   0.595
XCC1690
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.551
XCC4021
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.456
guaA
Glutamine amidotransferase; Catalyzes the synthesis of GMP from XMP.
     
 0.443
tolC
TolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.437
fhaC
Outer membrane hemolysin activator protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.427
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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