Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tspOTryptophan-rich sensory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (156 aa)    
Predicted Functional Partners:
tpmT
Thiopurine methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
      
 0.796
XCC0056
Hemolysin III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.751
hly3
Hemolysin III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.751
phr
Photolyase-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DNA photolyase family.
 
  
 0.630
XCC2415
Conserved hypothetical protein; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 500-fold lower efficiency. Displays no proline racemase activity.
   
    0.573
plaS
Accessory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.496
cII
Phage-related regulatory protein cII; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.488
dapA
Dihydroxydipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      
 0.420
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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