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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsr-3Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (790 aa)    
Predicted Functional Partners:
cheW
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.967
cheR-2
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.964
cheB-2
Glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.963
cheD
Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  0.963
cheA
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.963
cheV
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.958
cheA-3
Chemotaxis histidine protein kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.957
cheW-3
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.947
cheW-4
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.946
cheW-2
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.941
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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