Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
motAMotA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (246 aa)    
Predicted Functional Partners:
motB
MotB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
motB-2
Chemotaxis MotB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.996
flgK
Flagellar protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the flagella basal body rod proteins family.
 
  
 0.961
fliG
Flagellar protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.953
flgC
Flagellar biosynthesis, cell-proximal portion of basal-body rod; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the flagella basal body rod proteins family.
 
  
 0.947
fliP
Flagellar biosynthetic protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.946
fliF
Flagellar protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.942
fliN
Flagellar protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.931
flgE
Flagellar biosynthesis, hook protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.927
cheR-4
Methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.927
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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