Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
rbfCO-antigen biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1203 aa)    
Predicted Functional Partners:
gumD
GumD protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.970
wzm
Membrane subunit of LPS efflux transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.919
wzt
ATP binding component of ABC-transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.857
vioA
Nucleotide sugar transaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.835
XCC1929
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.794
XCC1930
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
  
 0.787
XCC1931
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.785
wxcM
Bifunctional acetyl transferase/isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.781
wxcX
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.736
xanB
Phosphomannose isomerase/GDP-mannose pyrophosphorylase; Involved in xanthan production.
  
  
 0.717
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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