Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC1929Hypothetical protein; Putative; ORF located using Glimmer/Genemark. (377 aa)    
Predicted Functional Partners:
rbfC
O-antigen biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.794
XCC1931
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.785
vioA
Nucleotide sugar transaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
       0.780
XCC1930
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
     
 0.779
entF
ATP-dependent serine activating enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.668
fleQ
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.565
XCC1934
Response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.565
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.565
fliF
Flagellar protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.441
fliG
Flagellar protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.439
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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