STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilFFimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (262 aa)    
Predicted Functional Partners:
pilO
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.884
XCC1984
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.864
pilN
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.862
rlmN
Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.817
pilQ
Fimbrial assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.817
pilP
Fimbrial assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.809
pilM
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.788
gspE
General secretory pathway related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.765
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.752
XCC1985
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.731
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.