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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA-5TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (872 aa)    
Predicted Functional Partners:
prnA-2
Tryptophan halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.732
prnA
Tryptophan halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.721
prnA-3
Tryptophan halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.717
XCC2827
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.712
XCC3964
SapC related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.712
fyuA-3
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.710
XCC3965
Pass1-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.701
fyuA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.696
XCC2826
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.688
btuB-6
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.679
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.