STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxnAGlucose 1-dehydrogenase homolog; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (292 aa)    
Predicted Functional Partners:
fdh
Glutathione-dependent formaldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.737
cypC
Fatty acid alpha hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.635
ucpA
Alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.551
XCC1995
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.495
XCC1994
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.482
drb0080
3-alpha-hydroxysteroid dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.477
phbB
acetoacetyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.471
ybdR
Zn-dependent alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.470
XCC1057
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.426
entF
ATP-dependent serine activating enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.418
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.