Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC1994Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (231 aa)    
Predicted Functional Partners:
fdh
Glutathione-dependent formaldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.818
XCC1995
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.808
cypC
Fatty acid alpha hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
XCC2467
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.724
XCC1625
Unknown acidic aa rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.714
XCC2722
Phospholipase A1; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.677
XCC0449
Lytic enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.616
XCC2836
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.614
XCC1973
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.611
XCC2425
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.605
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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