Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gVI-2Minor coat protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (106 aa)    
Predicted Functional Partners:
gI-2
pI protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.951
gIII-2
Adsorption protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.951
XCC2071
Major coat protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.933
gI
pI protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.804
gVIII
Major coat protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
gIII
Adsorption protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
XCC2072
Minor coat protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.612
XCC2073
Minor coat protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.612
XCC2074
Single-stranded DNA binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.538
gII-2
Replication initiation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.538
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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