STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2189Epimerase/dehydratase protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (612 aa)    
Predicted Functional Partners:
galU
UTP-glucose-1-phosphate uridylyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.882
wxcD
Membrane protein WxcD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.838
wxcK
Aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.834
rfb303
Lipopolysaccharide core biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.831
XCC1671
Aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.825
vioA
Nucleotide sugar transaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.803
XCC1253
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
      
 0.799
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis; Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.769
gmd
GDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.764
xanB
Phosphomannose isomerase/GDP-mannose pyrophosphorylase; Involved in xanthan production.
  
  
 0.725
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.