STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdsCFormate dehydrogenase b chain; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family. (281 aa)    
Predicted Functional Partners:
XCC2354
Formate dehydrogenase a chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.984
yhjX
Integral membrane transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.844
XCC2664
Formate dehydrogenase related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.815
rubA
Rubredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.806
XCC2353
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.789
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
 
  
 0.719
radC
DNA repair protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0758 family.
     
 0.644
purH
Bifunctional purine biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.620
ribA
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
      
 0.605
nuoF
NADH-ubiquinone oxidoreductase NQO1 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
  
 0.524
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.