STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfNRpfN protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (378 aa)    
Predicted Functional Partners:
fruA
PTS system,fructose-specificIIBC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FruAB PTS system is involved in fructose transport.
 
   
 0.767
XCC1350
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.727
fruB
Multiphosphoryl transfer protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II FruAB PTS system is involved in fructose transport.
 
     0.658
XCC1104
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.646
XCC0320
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
   
 0.618
XCC2693
Cysteine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.562
XCC1478
Outer membrane component of multidrug efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.559
bcsC
Cellulose synthase subunit C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.510
XCC1480
Toxin secretion ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.487
fruK
1-phosphofructokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the carbohydrate kinase PfkB family.
 
     0.472
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.