Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC2399Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1445 aa)    
Predicted Functional Partners:
xsa
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
   
0.679
pel
Pectate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.667
avrBs2
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.656
pel-2
Pectate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.650
XCC1778
Mannan endo-1,4-beta-mannosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.632
engXCA
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.620
gumF
GumF protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.619
XCC1625
Unknown acidic aa rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.612
iucA
Iron transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.603
gumI
GumI protein; Nonprocessive beta-mannosyltransferase that catalyzes the transfer of a mannose residue from GDP-mannose to glucuronic acid-beta- 1,2-mannose-alpha-1,3-glucose-beta-1,4-glucose-PP-polyisoprenyl to form the lipid-linked pentasaccharide repeating unit of xanthan, Man-GlcA- Man-Glc(2)-PP-Pol. Is involved in the biosynthesis of the exopolysaccharide xanthan (By similarity); Belongs to the glycosyltransferase 94 family.
 
   0.599
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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