Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilY1PilY1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (516 aa)    
Predicted Functional Partners:
pilX
PilX protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.990
pilV
Pre-pilin leader sequence; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.988
XCC2491
PilY1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.986
fimT-2
Pre-pilin like leader sequence; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.974
pilE1
Type IV pilin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.968
XCC2493
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.959
fimT
Fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.954
pilO
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.819
pilN
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.812
pilP
Fimbrial assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.802
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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