STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2491PilY1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (704 aa)    
Predicted Functional Partners:
pilY1
PilY1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.986
XCC2493
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.968
pilX
PilX protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.965
pilV
Pre-pilin leader sequence; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.953
pilE1
Type IV pilin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.872
fimT-2
Pre-pilin like leader sequence; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.859
XCC0714
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.717
XCC2490
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.693
XCC3984
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.687
XCC0955
peptidyl-Asp metalloendopeptidase; Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues. Belongs to the peptidase M72 family.
 
   
 0.681
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.