Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slyD-2Peptidyl-prolyl cis-trans isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (159 aa)    
Predicted Functional Partners:
hspA
Low molecular weight heat shock protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the small heat shock protein (HSP20) family.
      
 0.788
XCC0257
Nitrile hydratase activator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.601
yxaH
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.585
XCC2583
Lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.579
dadA
D-amino acid dehydrogenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.552
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.549
XCC2579
Reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.541
ndh
NADH dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.478
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
 
   
 0.454
cysS
cysteinyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.418
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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