Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprO-2Polyphosphate-selective porin O; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (376 aa)    
Predicted Functional Partners:
pilR
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.705
XCC2588
Lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.678
XCC2587
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.619
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
     
 0.480
XCC2586
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.480
bfeA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.441
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
      
 0.441
XCC2591
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.429
XCC2592
Histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.415
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.