Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC2674Extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (567 aa)    
Predicted Functional Partners:
XCC2675
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.773
XCC0854
Extracellular protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the peptidase S8 family.
  
   
 0.626
XCC1663
Serine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.612
XCC0955
peptidyl-Asp metalloendopeptidase; Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues. Belongs to the peptidase M72 family.
 
 
 0.611
XCC0852
Extracellular protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the peptidase S8 family.
  
   
 0.610
XCC0659
Protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the peptidase S8 family.
  
   
 0.605
XCC0851
Extracellular protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.598
XCC2475
VirB3 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.552
virB2
VirB2 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.517
XCC2749
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.510
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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