Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC2830Hypothetical protein; Putative; ORF located using Glimmer/Genemark. (94 aa)    
Predicted Functional Partners:
XCC2829
Peptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.953
XCC3592
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.733
soxR
Transcriptional regulator soxR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.678
gaa
glutaryl-7-ACA acylase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.533
hpyO
Monoxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU). Is likely to be involved in the urate degradation pathway to allantoin. Is slightly more efficient (about 2.6 times) with NADPH than NADH as the electron donor.
  
     0.497
fecA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.488
add
Adenosine deaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.482
gatA
Glu-tRNAGln amidotransferase A subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.479
XCC0947
Non-hemolytic phospholipase C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.465
glpF
Glycerol uptake facilitator protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
   
 0.462
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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