STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdMType I restriction enzyme M protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (502 aa)    
Predicted Functional Partners:
XCC2901
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
 
 0.981
XCC2904
Type I restriction enzyme (specificity chain) homolog; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.970
XCC0463
Putative restriction modification system specificity subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.951
XCC2905
HsdR protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.948
hsdR
Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.913
XCC2906
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.862
XCC2903
DNA-damage-inducible protein d; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.840
XCC2734
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
 
 0.734
XCC0465
DNA-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.724
XCC2102
YeeC-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.594
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.