Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
XCC2965Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (408 aa)    
Predicted Functional Partners:
XCC2966
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.963
vapI
Virulence associated protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.549
XCC1068
Possible DNA methylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
   0.528
XCC0340
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
   
 0.526
XCC0466
Type I site-specific deoxyribonuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.504
XCC4142
XmnI methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.480
cysB
Cystathionine beta-synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.454
hsdR
Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
     0.452
XCC0463
Putative restriction modification system specificity subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.450
hsdM
Type I restriction enzyme M protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.425
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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