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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2995Hypothetical protein; Putative; ORF located using Glimmer/Genemark. (315 aa)    
Predicted Functional Partners:
XCC0483
Two-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.807
rsbR
Positive regulator of sigma-B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.697
rsbS
Negative regulator of sigma-B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.697
XCC1887
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.697
XCC2699
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
 
 0.697
spoIIAA
Anti-sigma F factor antagonist; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.697
fliA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 
 0.681
icfG
IcfG protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.681
pdeA-2
c-di-GMP phosphodiesterase A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.622
XCC1294
Sensor histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.606
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.