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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecA-5Citrate-dependent iron transporter; Outer membrane receptor; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (709 aa)    
Predicted Functional Partners:
mphE
4-hydroxy-2-oxovalerate aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the HpcH/HpaI aldolase family.
 
     0.864
XCC3052
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.859
yceE
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.853
iucA
Iron transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.834
XCC3051
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.808
fecR
Transmembrane sensor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.762
lysA-2
Diaminopimelate decarboxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.728
XCC4162
Ferrichrome-iron receptor 3; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.570
fhuA-6
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.529
uidR
Transcriptional regulator uid family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.501
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.