Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
btuB-8Outer membrane receptor for transport of vitamin B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (626 aa)    
Predicted Functional Partners:
tonB
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity).
 
 
 
 0.698
tonB-2
TonB like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.698
XCC3065
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
   
 0.696
cobB
Cobyrinic acid a,c-diamide synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.681
XCC1593
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.676
XCC2081
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.675
btuR
cob(I)alamin adenolsyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
  
  
 0.623
XCC3967
TonB-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.609
XCC3058
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.572
XCC3066
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.568
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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