STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBPilus biogenesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (577 aa)    
Predicted Functional Partners:
pilC
Fimbrial assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.989
pilD
Type IV pre-pilin leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.976
pilZ
Type IV fimbriae assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 
 0.946
xpsF
General secretion pathway protein F; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.933
xcsF
Type II secretion system protein F; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.933
pilQ
Fimbrial assembly protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.892
pilM
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.842
xcsL
Type II secretion system protein L; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.817
pilO
Fimbrial assembly membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.728
pilE
Pilin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.701
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.