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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3140Truncated IS1477 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (78 aa)    
Predicted Functional Partners:
XCC3137
Truncated IS1477 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.865
XCC3125
IS1477 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.775
XCC0534
ISxcd1 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.769
XCC2098
ISxcd1 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.752
XCC2472
ISD1 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.749
XCC3138
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.579
XCC3139
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    
0.529
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.