Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tdcFTdcF protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (167 aa)    
Predicted Functional Partners:
XCC3278
Flavin monoamine oxidase-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.944
XCC3277
Cytochrome C6; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.922
pyrC
Dihydroorotase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.808
XCC2316
3-methyladenine DNA glycosylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DNA glycosylase MPG family.
      
 0.799
murE
UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.796
murD
UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of L-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine. Belongs to the MurCDEF family. MurD2 subfamily.
      
 0.755
fhuA-8
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.716
hisC-3
Histidinol-phosphate aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.711
ampG
Signal transducer; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
XCC3715
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.525
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.