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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolCTolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (457 aa)    
Predicted Functional Partners:
XCC3170
RND efflux membrane fusion protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.973
acrB
Multidrug-efflux transporter acrB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.972
acrA
Multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.968
mexA
Multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.958
mtrC
Membrane fusion protein precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.951
acrF
Acriflavin resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.947
oprM
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
0.910
acrE
Acriflavin resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.837
pcm-2
L-isoaspartate protein carboxylmethyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.811
czcB
Cation efflux system protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.806
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.