Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nodBAcetylxylan esterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (258 aa)    
Predicted Functional Partners:
XCC2035
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC2574
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC2575
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC2576
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC2710
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC3671
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
XCC3368
Glutaredoxin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.571
nodL
Nodulation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.528
bacA
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.511
actII-3
Membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.485
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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