close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3377Truncated rhamnogalacturonase B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (233 aa)    
Predicted Functional Partners:
XCC3378
Truncated rhamnogalacturonase B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.994
XCC3379
Truncated rhamnogalacturonase B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.989
celS
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.765
egl
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.761
egl-2
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.761
egl-3
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.761
XCC1752
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.711
galA-2
Arabinogalactan endo-1,4-beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.711
hrpW
HrpW protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.664
XCC3534
1,4-beta-cellobiosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase family 6.
  
     0.661
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.