STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3389Alcohol dehydrogenase C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (369 aa)    
Predicted Functional Partners:
XCC3387
Esterase; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
gfa
Conserved hypothetical protein; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.
    
 0.991
yahK
Alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
0.942
aldA
Chloroacetaldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
  
 0.912
badH
Aldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
  
 0.912
adhC
Alcohol dehydrogenase class III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 
0.901
XCC3278
Flavin monoamine oxidase-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
XCC3390
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.857
folD
Bifunctional methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
      
 0.762
pykA
Pyruvate kinase type II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the pyruvate kinase family.
   
  
 0.672
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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