Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC3401Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (245 aa)    
Predicted Functional Partners:
dsbA-2
Thiol:disulfide interchange protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.751
dsbA
Disulfide oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.674
XCC3234
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.569
betT
High-affinity choline transport; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.558
gcvR
Glycine cleavage system transcriptional repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.549
XCC2164
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.504
XCC3862
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.472
cycA-2
Cytochrome C4; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.459
XCC1323
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.440
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
       0.421
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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