STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betACholine dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (556 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 
 0.968
XCC1420
Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
  
  
  0.822
dpsD
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.803
XCC0947
Non-hemolytic phospholipase C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.800
plcN
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.800
XCC3277
Cytochrome C6; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.777
XCC3477
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
 
 0.777
betT
High-affinity choline transport; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the BCCT transporter (TC 2.A.15) family.
 
  
 0.734
XCC0171
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
    
 0.725
XCC0682
Cellulose synthase subunit C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.725
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.