Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xcsDType II secretion system protein D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (690 aa)    
Predicted Functional Partners:
xcsC
Type II secretion system protein C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.983
xcsG
Type II secretion system protein G; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.956
xcsF
Type II secretion system protein F; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.949
xcsJ
Type II secretion system protein J; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.947
xcsE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.936
xpsD
General secretion pathway protein D; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. This subunit forms the outer membrane channel. Belongs to the bacterial secretin family. GSP D subfamily.
  
  
0.934
xcsI
Type II secretion system protein I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.928
xcsK
Type II secretion system protein K; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.927
xcsL
Type II secretion system protein L; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.911
xcsH
Type II secretion system protein H; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.900
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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