Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC3465NTPase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (237 aa)    
Predicted Functional Partners:
XCC3462
Truncated NTPase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.962
virB10
VirB10 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.832
virB4
VirB4 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.813
virB9
VirB9 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.805
virB8
VirB8 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.762
virB11
VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.753
virB1
VirB1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.679
XCC3463
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.623
XCC3464
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.623
XCC3118
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.452
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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