STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepN-3Aminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (675 aa)    
Predicted Functional Partners:
pepQ-2
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C-terminal position.
 
 
 0.834
pepP
Aminopeptidase P; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.795
pepQ
Proline dipeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.791
XCC3486
Response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
    
 0.727
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
   
 
 0.614
XCC4016
Dipeptidyl-peptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.603
yrbC
Toluene tolerance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.566
cycK
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.552
cycK-2
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.552
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.