Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rmrB-2MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (550 aa)    
Predicted Functional Partners:
XCC3489
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.974
rmrA
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.949
XCC2833
Synthetase/amidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
yhdG-3
Amino acid transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
pmrA
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.767
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.759
bioA-2
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.759
oprN-3
Outer membrane protein OprN precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.739
oprN
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.705
oprN-2
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.702
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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