Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XCC3489Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (390 aa)    
Predicted Functional Partners:
rmrB-2
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.974
rmrB
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
 
 
 0.881
pmrB
Multidrug resistance membrane translocase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
 
 
 0.865
tolC
TolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.706
yieO
Drug resistance translocase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
 
 
 0.704
emrA
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
 
 
 0.690
XCC3490
ElaA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.689
codA
Cytosine deaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.689
yjcP
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.680
oprN-3
Outer membrane protein OprN precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.663
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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