Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GNLGluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (305 aa)    
Predicted Functional Partners:
gnl
Gluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 
0.921
gcd-2
Glucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.919
gcd
Glucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.917
XCC2550
2-hydroxyacid dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.908
idnK
Gluconokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.907
hrmI
Hexuronic acid isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.833
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.823
XCC3592
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.814
peh-1
Endopolygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
rng
Ribonuclease G; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.758
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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