Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XCC3596Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (540 aa)    
Predicted Functional Partners:
pbuA
Ferric pseudobactin M114 receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.913
XCC3598
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.812
XCC3597
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.797
XCC0252
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.768
fpvA-2
Ferripyoverdine receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.706
XCC0250
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.705
fecR
Transmembrane sensor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.671
fpvA
Ferripyoverdine receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.648
fhuE
Outer membrane receptor for ferric iron uptake; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.618
fhuA-2
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.570
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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