STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3871Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (179 aa)    
Predicted Functional Partners:
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.894
xadA
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.756
cirA-4
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.749
XCC1773
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.747
wxcN
Sugar translocase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.730
XCC2078
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.729
XCC4239
Polysaccharide deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.729
XCC2560
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.726
XCC1268
Regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.719
mdoB
Phosphoglycerol transferase I; Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones; Belongs to the OpgB family.
  
     0.712
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.