Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC3908Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (262 aa)    
Predicted Functional Partners:
XCC1756
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.662
XCC0134
Trehalose synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.653
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.629
xynA
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.596
gfo
Glucose-fructose oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.571
XCC4070
Conserved hypothetical protein; Plays a role in the catabolism of L-fucose. Involved in the anomeric conversion of L-fucose; Belongs to the RbsD / FucU family. FucU mutarotase subfamily.
  
     0.567
XCC1753
Sialic acid-specific 9-O-acetylesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.514
XCC0105
ATP-dependent DNA ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.463
lig3
ATP-dependent DNA ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.463
fucA1
alpha-L-fucosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.461
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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