Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
XCC3967TonB-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (335 aa)    
Predicted Functional Partners:
XCC0007
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.778
exbB
Biopolymer transport ExbB protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity).
 
 
 0.688
XCC2651
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.685
XCC1583
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.679
xpsM
General secretion pathway protein M; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.678
XCC1129
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.676
XCC1410
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.675
XCC2920
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.675
exbD2
Biopolymer transport ExbD2 protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
 
 
 0.672
gumN
GumN protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.671
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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