Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC4000Dolichyl-phosphate mannose synthase related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (273 aa)    
Predicted Functional Partners:
XCC3999
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.946
fabF-2
beta-ketoacyl-[ACP] synthase II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.884
XCC4001
Halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.870
acpC
Acyl carrier protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.793
actII-3
Membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.785
XCC4008
Acyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.770
XCC4015
AMP-ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.737
XCC4007
Fatty acyl CoA synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.700
XCC4004
Phosphotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.645
XCC4013
Reductase/halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.592
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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