Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fldW4-oxalomesaconate hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (340 aa)    
Predicted Functional Partners:
fldZ
Acyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.989
fldA
FldA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.982
fldY
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
 
     0.809
pcaH-2
Protocatechuate 3,4-dioxygenase beta chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.801
ligA
Protocatechuate degradation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.754
vanA-2
Vanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.656
XCC0351
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.563
pobA
P-hydroxybenzoate hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.527
pobR
PobR regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.473
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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