Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC4065Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (335 aa)    
Predicted Functional Partners:
XCC4066
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  0.995
XCC0141
L-fucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 
0.922
XCC4067
Oxidoreductase; Plays a role in the catabolism of L-fucose. Catalyzes the NAD(+)-dependent oxidation of 2-keo-3-deoxy-L-fuconate to 2,4-diketo-3- deoxy-L-fuconate; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.811
scrK
Fructokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.804
tyrB
Aromatic-amino-acid aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.684
XCC4069
RTS beta protein; Plays a role in the catabolism of L-fucose. Catalyzes the dehydration of L-fuconate to 2-keto-3-deoxy-L-fuconate by the abstraction of the 2-proton to generate an enediolate intermediate that is stabilized by the magnesium ion. L-fuconate is the preferred substrate with 15-fold lower activity observed for L-galactonate and 8- fold lower activity with D-arabinonate. No activity detected with D- fuconate. Can also catalyze the epimerization of L-talonate and D- ribonate, but at slow rates.
  
   
 0.679
aspC
Aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
aspC-2
Aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
lctD
L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
    
 
 0.572
GNL
Gluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.527
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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