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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4065Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (335 aa)    
Predicted Functional Partners:
XCC4066
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
XCC0141
L-fucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
0.940
XCC4067
Oxidoreductase; Plays a role in the catabolism of L-fucose. Catalyzes the NAD(+)-dependent oxidation of 2-keo-3-deoxy-L-fuconate to 2,4-diketo-3- deoxy-L-fuconate; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.874
XCC4070
Conserved hypothetical protein; Plays a role in the catabolism of L-fucose. Involved in the anomeric conversion of L-fucose; Belongs to the RbsD / FucU family. FucU mutarotase subfamily.
  
  
 0.818
scrK
Fructokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
  0.802
fucP-2
Fucose permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.786
XCC4069
RTS beta protein; Plays a role in the catabolism of L-fucose. Catalyzes the dehydration of L-fuconate to 2-keto-3-deoxy-L-fuconate by the abstraction of the 2-proton to generate an enediolate intermediate that is stabilized by the magnesium ion. L-fuconate is the preferred substrate with 15-fold lower activity observed for L-galactonate and 8- fold lower activity with D-arabinonate. No activity detected with D- fuconate. Can also catalyze the epimerization of L-talonate and D- ribonate, but at slow rates.
  
  
 0.674
XCC4068
2,4-didehydro-3-deoxy-L-rhamnonate hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.478
XCC1110
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.471
glpF
Glycerol uptake facilitator protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.439
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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