Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fucP-2Fucose permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (432 aa)    
Predicted Functional Partners:
XCC4070
Conserved hypothetical protein; Plays a role in the catabolism of L-fucose. Involved in the anomeric conversion of L-fucose; Belongs to the RbsD / FucU family. FucU mutarotase subfamily.
 
   
 0.971
XCC4066
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.835
xylP
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.831
XCC0141
L-fucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.664
XCC4069
RTS beta protein; Plays a role in the catabolism of L-fucose. Catalyzes the dehydration of L-fuconate to 2-keto-3-deoxy-L-fuconate by the abstraction of the 2-proton to generate an enediolate intermediate that is stabilized by the magnesium ion. L-fuconate is the preferred substrate with 15-fold lower activity observed for L-galactonate and 8- fold lower activity with D-arabinonate. No activity detected with D- fuconate. Can also catalyze the epimerization of L-talonate and D- ribonate, but at slow rates.
 
   
 0.601
XCC2894
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.551
ggt
Gamma-glutamyltranspeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.543
ggt-2
Gamma-glutamyltranspeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.543
ggt-3
Gamma-glutamyltranspeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.543
kdgR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.519
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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